PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_879C8557D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 682aa    MW: 75647.9 Da    PI: 6.9951
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_879C8557D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.22.4e-2739129188
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                            +fY+ YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e+++ +    ++++++r+ tr+gCka++++kk + gkw+vtk+++ H
  Traes_4DL_879C8557D.1  39 DFYSLYARHAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETRNCEglhPDQKQQERTGTRVGCKAMIMIKKIDPGKWVVTKFVKTH 126
                            6*******************************************9999999999********************************** PP

                   FAR1  86 nHe 88 
                            nH 
  Traes_4DL_879C8557D.1 127 NHG 129
                            **6 PP

2FAR189.45e-28177269290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                            fY +YA+  GF+ r+s+  +s+r+++i++r+ vCskeg+re + kk    + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eH
  Traes_4DL_879C8557D.1 177 FYINYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRAKKeitdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEH 264
                            9*****************************************99999998899999******************************** PP

                   FAR1  86 nHela 90 
                            nH+l 
  Traes_4DL_879C8557D.1 265 NHSLL 269
                            **996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-2439129IPR004330FAR1 DNA binding domain
PfamPF031015.0E-26177269IPR004330FAR1 DNA binding domain
PROSITE profilePS5010310.352430458IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MEISSHEPSE AEILIGHEDD TELTPCEGME FESEDAARDF YSLYARHAGF RIRISRYTRS  60
RRDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTGTR VGCKAMIMIK KIDPGKWVVT  120
KFVKTHNHGS VPPRKLDIRS AHQDLNPVEK PHSAEEDPVE EPVEGMEFDS EETAKLFYIN  180
YARLNGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRA KKEITDEGKT KRPRMITRVG  240
CKAMIVVKKM NSGKWMVSKF EKEHNHSLLS SKQAPSTSNI TSGENAEFAA KSSDPDEAKV  300
EEYSAGIQCN STDSLTVLYN QLCQEAIKFA KEGSVTEEIY HVAMSALKEA AEKVAQLKSC  360
HPTMPHRGVS SSESKHKVVQ MKTMSASQCS DVAKQKTTPS QLTMFQESTS KLMFIPTNLL  420
TDSGLANSDN NHPSLCAFTS SGRQCRHGSE CSYLHAENRK EDCPEKYQNS TSSRATQGNH  480
STYHGHSEET TVAIPAIPLT LYMPLSRNSP GASADGQYKL LAAPIEAVPI SYRPAEPIRQ  540
PKRSFCNLGP LPGVMSELTR REKGPHPLVH ATALACGARV VPVEEAASLI KAIESKIRSG  600
GAKIARLPSS RLTRLVPEAV SMSSSSEDGE DNDHSEPPAV NVAGYCHDDQ ISEEMKLQGE  660
ASELETDSEN CSGHENHDTA DC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752890.10.0PREDICTED: uncharacterized protein LOC100841807
TrEMBLW5EJD00.0W5EJD0_WHEAT; Uncharacterized protein
STRINGBRADI1G67740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90313345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-29FAR1 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]